- Examples of mathematical annotation in R
- Tutorial of R library “rentrez”: interface to the NCBI’s EUtils API to search and pull data like GenBank and PubMed
- Databases: entrez_dbs(), entrez_db_summary(), entrez_db_searchable(), entrez_db_links()
- Search data: entrez_search(), entrez_link(), linkout_urls()
- Get data: entrez_summary(), extract_from_esummary(), entrez_fetch()
- Testing phylogenetic signal
- Moran’s I, Abouheif’s Cmean, Pagel’s λ, and Blomberg’s K
- Phylogenetic independent contrast
- Phylogenetic diversity
- pd (ses.pd), mpd (ses.mpd)