My Software

• Topological Data Analysis with R. Code with examples: Lab 1, Lab 2, Lab 3.
• My version of Pawel Dlotko’s The Persistence Landscape Toolbox. ComputePersistenceLandscape uses standard i/o rather than file i/o. Rename from .txt to .tgz.

Software written or maintained by members or former members of my research group

• Topological Data Analysis for Python: scikit-tda, maintained by Michael Catanzaro
• Software for Topological Data Analysis of Images: TDAExplore, by Parker Edwards
• Software for Topological Data Analysis of Video: tda-for-worm-behavior, by Ashleigh Thomas
• Jose Bouza’s R package tda-tools.

Software by other researchers at the University of Florida

• Hubert Wagner
• Cory Brunson: plt: Persistence Landscapes Toolbox, tdaverse

Other Software

• The R package TDA: Statistical Tools for Topological Data Analysis, by Brittany T. Fasy, Jisu Kim, Fabrizio Lecci, Clement Maria
• GUDHI: a generic open source C++ library, with a Python interface, for Topological Data Analysis (TDA) and Higher Dimensional Geometry Understanding by INRIA
• Pawel Dlotko’s The Persistence Landscape Toolbox
• PLLay: Efficient Topological Layer based on Persistence Landscapes, by Kwangho Kim, Jisu Kim, Manzil Zaheer, Joon Sik Kim, Frederic Chazal, Larry Wasserman
• Ripser, by Ulrich Bauer
• Eirene, by Gregory Henselman
• Dionysus: a C++ Library for computing persistent homology, and Dionysus 2, by Dmitriy Morozov
• The Perseus Software Project for Rapid Computation of Persistent Homology, by Vidit Nanda
• JavaPlex: the Persistent Homology and Topological Data Analysis Library, by Andrew Tausz, Mikael Vejdemo-Johansson and Henry Adams
• PHAT: the Persistent Homology Algorithm Toolbox by Ulrich Bauer, Michael Kerber, Jan Reininghaus
• CHOMP: Computational Homology Project by Konstantin Mischaikow’s group
• SimBa, by Tamal K Dey , Dayu Shi , Yusu Wang
• SimPers, by Tamal K Dey , Fengtao Fan , Dayu Shi , Yusu Wang